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Abstract A new dynamical core of Environment and Climate Change Canada’s Global Environmental Multiscale (GEM) atmospheric model is presented. Unlike the existing log-hydrostatic-pressure-type terrain-following vertical coordinate, the proposed core adopts a height-based approach. The move to a height-based vertical coordinate is motivated by its potential for improving model stability over steep terrain, which is expected to become more prevalent with the increasing demand for very high-resolution forecasting systems. A dynamical core with height-based vertical coordinate generally requires an iterative solution approach. In addition to a three-dimensional iterative solver, a simplified approach has been devised allowing the use of a direct solver for the new dynamical core that separates a three-dimensional elliptic boundary value problem into a set of two-dimensional independent Helmholtz problems. The issue of dynamics–physics coupling has also been studied, and incorporating the physics tendencies within the discretized dynamical equations is found to be the most acceptable approach for the height-based vertical coordinate. The new dynamical core is evaluated using numerical experiments that include two-dimensional nonhydrostatic theoretical cases as well as 25-km resolution global forecasts. For a wide range of horizontal grid resolutions—from a few meters to up to 25 km—the results from the direct solution approach are found to be equivalent to the iterative approach for the new dynamical core. Furthermore, results from the different numerical experiments confirm that the new height-based dynamical core is equivalent to the existing pressure-based core in terms of solution accuracy.