Climate‐Driven Variations in Nitrogen Retention From a Riverine Submerged Aquatic Vegetation Meadow

Abstract Large rivers can retain a substantial amount of nitrogen (N), particularly in submerged aquatic vegetation (SAV) meadows that may act as disproportionate control points for N retention. However, the temporal variation of N retention in large rivers remains unknown since past measurements were snapshots in time. Using high‐frequency plants and NO 3 − measurements over the summers 2012–2017, we investigated how the climate variation influenced N retention in a SAV meadow (∼10 km 2 ) at the confluence zone of two agricultural tributaries entering the St. Lawrence River. Distinctive combinations of water temperature and level were recorded between years, ranging from extreme hot‐low (2012) and cold‐high (2017) summers (2°C and 1.4 m interannual range). Using an indicator of SAV biomass, we found that these extreme hot‐low and cold‐high years had reduced biomass compared to hot summers with intermediate levels. In addition, changes in main stem water levels were asynchronous with the tributary discharges that controlled NO 3 − inputs at the confluence. We estimated daily N uptake rates from a moored NO 3 − sensor and partitioned these into assimilatory and dissimilatory pathways. Measured rates were variable but among the highest reported in rivers (median 576 mg N m −2  d −1 , range 60–3,893 mg N m −2  d −1 ) and SAV biomass promoted greater proportional retention and permanent N loss through denitrification. We estimated that the SAV meadow could retain up to 0.8 kt N per year and 87% of N inputs, but this valuable ecosystem service is contingent on how climate variations modulate both N loads and SAV biomass. , Plain Language Summary Large rivers remove significant amounts of nitrogen pollution generated by humans in waste waters and from fertilizers applied to agricultural lands. Underwater meadows of aquatic plants remove nitrogen particularly well. To keep the river clean, plants use the nitrogen themselves and promote conditions where bacteria can convert this pollution into a gas typically found in air. Measuring nitrogen removal in rivers is really difficult, and we do not know how climate conditions influence this removal or plant abundance. We successfully measured nitrogen pollution removal from an underwater plant meadow in a large river over six summers. We found that plant abundance and river nitrogen inputs were critical to determine how much pollution was removed, and that these were controlled by climatic conditions. Plant abundance was controlled by both water temperatures and levels. When water was warm and levels were neither too high nor too low, conditions were perfect for lots of plants to grow, which mainly stimulated bacteria that permanently eliminated nitrogen. We showed that the amount of nitrogen pollution removed over the summer by the meadow changes with climatic conditions but in general represents the amount produced by a city of half a million people. , Key Points Nitrogen retention and biomass were measured at a high resolution over six summers in a submerged aquatic vegetation meadow of a large river Among the highest riverine, nitrate uptake rates were recorded, and 47%–87% of loads were retained with plants favoring denitrification Interannual climate variations influenced nitrate retention by altering water levels, temperature, plant biomass, and tributary nitrate load