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Background: Although floods may have important respiratory health impacts, few studies have examined this issue. This study aims to document the long-term impacts of the spring floods of 2019 in Quebec by (1) describing the population affected by the floods; (2) assessing the impacts on the respiratory system according to levels of exposure; and (3) determining the association between stressors and respiratory health. Methods: A population health survey was carried out across the six most affected regions 8–10 months post-floods. Data were collected on self-reported otolaryngology (ENT) and respiratory symptoms, along with primary and secondary stressors. Three levels of exposure were examined: flooded, disrupted and unaffected. Results: One in ten respondents declared being flooded and 31.4% being disrupted by the floods. Flooded and disrupted participants reported significantly more ENT symptoms (adjusted odds ratio (aOR): 3.18; 95% CI: 2.45–4.14; aOR: 1.76; 95% CI: 1.45–2.14) and respiratory symptoms (aOR: 3.41; 95% CI: 2.45–4.75; aOR: 1.45; 95% CI: 1.10–1.91) than the unaffected participants. All primary stressors and certain secondary stressors assessed were significantly associated with both ENT and respiratory symptoms, but no “dose–response” gradient could be observed. Conclusion: This study highlights the long-term adverse effects of flood exposure on respiratory health.